Hello,
we currently do not support odd GPU numbers. So if you have 3 GPU you can use only 2 of them. 4 GPU should work and be faster than 2 GPUs. As to you tracking speed, measured speed look strange. Expected tracking speeds for single GPU can be found here
http://ipisoft.com/pr/GPU_speed_v_14_04.pdfThese are speeds with head tracking turned off. Turning it on lead to around twice slower speeds. Refine speed approximately equal to Track Forward speed.
Quadro GPUs are MUCH slower for iPi Mocap, so you should not get the same speed as with gtx 780. Maybe you measured tracking speeds with different options / number of cameras.
Also, bottleneck is not necessarily GPU. The speed may be limited by CPU.